Motif View

Internal ID 17679498
Source Database TransTermHP TERM 984
Feature Type terminator
Name
Rho-independent transcription terminator TERM 984
Sequence CCTCGAACTTCCCCCTCCCCCAATGAAGTTCGAGG
Look for more occurrences
Start 4471727
End 4471761
Strand -
Genomic Context
Replicon Pseudomonas stutzeri CCUG 29243 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCAGGCAAAAAAAA(5' tail) CCTCGAACTTC(5' stem) ATTGGGGGAGGGG(loop) GAAGTTCGAGG(3' stem) TCCAAATCCGGACCG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685