Motif View

Internal ID 17679738
Source Database TransTermHP TERM 359
Feature Type terminator
Name
Rho-independent transcription terminator TERM 359
Sequence GACGGGCCTCATGGCCCGTC
Look for more occurrences
Start 1637878
End 1637897
Strand +
Genomic Context
Replicon Pseudomonas stutzeri DSM 10701 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTGACCGAAAGAA(5' tail) GACGGGCC(5' stem) TCAT(loop) GGCCCGTC(3' stem) TTGCTTTTATGAGCC(3' tail). Confidence: 95. opp_overlap 1637863 1637878, overlap 1637875

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685