Motif View

Internal ID 17679800
Source Database TransTermHP TERM 459
Feature Type terminator
Name
Rho-independent transcription terminator TERM 459
Sequence GCAGAACGGCACCCGAAGGTGCCGTTCTGC
Look for more occurrences
Start 2384928
End 2384957
Strand +
Genomic Context
Replicon Pseudomonas stutzeri DSM 10701 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGCATGACGCATCA(5' tail) GCAGAACGGCACC(5' stem) CGAA(loop) GGTGCCGTTCTGC(3' stem) TATCTGCCCTAGTTG(3' tail). Confidence: 100. opp_overlap 2384934, overlap 2384934

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685