Motif View

Internal ID 17679989
Source Database TransTermHP TERM 765
Feature Type terminator
Name
Rho-independent transcription terminator TERM 765
Sequence CCCCCGATCCTCGAAAGAAGGTCGGGGG
Look for more occurrences
Start 3691862
End 3691889
Strand -
Genomic Context
Replicon Pseudomonas stutzeri DSM 10701 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCACGCAAAGACAAA(5' tail) CCCCCGACCTTC(5' stem) TTTC(loop) GAGGATCGGGGG(3' stem) TTTGGTGTAGAAGCT(3' tail). Confidence: 95. opp_overlap 3691862, overlap 3691858

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685