Motif View

Internal ID 17679992
Source Database TransTermHP TERM 771
Feature Type terminator
Name
Rho-independent transcription terminator TERM 771
Sequence CCTCGCTCCCTGGGCGGGG
Look for more occurrences
Start 3711823
End 3711841
Strand -
Genomic Context
Replicon Pseudomonas stutzeri DSM 10701 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGAAAAAACAAAA(5' tail) CCCCGCCC(5' stem) AGG(loop) GAGCGAGG(3' stem) TTCTGTCATCCACCC(3' tail). Confidence: 100. opp_overlap 3711823, overlap 3711818

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685