Motif View

Internal ID 17681014
Source Database TransTermHP TERM 226
Feature Type terminator
Name
Rho-independent transcription terminator TERM 226
Sequence GCCTGGCCGGGCGCAATGCCCGGCAAGGC
Look for more occurrences
Start 794068
End 794096
Strand -
Genomic Context
Replicon Pseudomonas putida HB3267, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCCATTCTACAGA(5' tail) GCCTTGCCGGGCA(5' stem) TTG(loop) CGCCCGGCCAGGC(3' stem) TGCGACCTGGTGAAT(3' tail). Confidence: 90.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685