Motif View

Internal ID 17681629
Source Database TransTermHP TERM 1303
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1303
Sequence TCGAGCGCCGCGCGGGCGGCGCTCGA
Look for more occurrences
Start 4979108
End 4979133
Strand -
Genomic Context
Replicon Pseudomonas putida HB3267, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTAGTACCCGTAAGA(5' tail) TCGAGCGCCGC(5' stem) CCGC(loop) GCGGCGCTCGA(3' stem) TCTCACAGGCACTAG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685