Motif View

Internal ID 17683833
Source Database TransTermHP TERM 104
Feature Type terminator
Name
Rho-independent transcription terminator TERM 104
Sequence CGAGCGGCCGGCACCCGTGCCGGCCGCCG
Look for more occurrences
Start 498742
End 498770
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa RP73, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCTGATCGGCGCGA(5' tail) CGAGCGGCCGGCA(5' stem) CCCG(loop) TGCCGGCCGC-CG(3' stem) TGTTTCAGAACAGCC(3' tail). Confidence: 93. gap 1, opp_overlap 498721, overlap 498740

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685