Motif View

Internal ID 17683839
Source Database TransTermHP TERM 119
Feature Type terminator
Name
Rho-independent transcription terminator TERM 119
Sequence GCCCCGCATCGCGGGGC
Look for more occurrences
Start 562605
End 562621
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa RP73, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCTGAGACGGAAA(5' tail) GCCCCGC(5' stem) GAT(loop) GCGGGGC(3' stem) TTTTTTCTGGGCGCC(3' tail). Confidence: 90. opp_overlap 562605

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685