Motif View

Internal ID 17685136
Source Database TransTermHP TERM 584
Feature Type terminator
Name
Rho-independent transcription terminator TERM 584
Sequence CCGGGGCCTGGTGCCCCGG
Look for more occurrences
Start 2835355
End 2835373
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CACAGAAAAGAAAAA(5' tail) CCGGGGC(5' stem) ACCAG(loop) GCCCCGG(3' stem) CTTCCATGCACCGAC(3' tail). Confidence: 100. opp_overlap 2835354

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685