Motif View

Internal ID 17685159
Source Database TransTermHP TERM 624
Feature Type terminator
Name
Rho-independent transcription terminator TERM 624
Sequence GGCGCTGCCATCCGTTCCGAAAAACGGGACGGAGGCGGCGCC
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Start 3043663
End 3043704
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTACGAAAAACAAAA(5' tail) GGCGCCGCC-TCCGTCCCG(5' stem) TTTTT(loop) CGGAACGGATGGCAGCGCC(3' stem) CAGTTCAGCTCAGGA(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685