Motif View

Internal ID 17685171
Source Database TransTermHP TERM 638
Feature Type terminator
Name
Rho-independent transcription terminator TERM 638
Sequence CGGGCCTTCGGGCCCG
Look for more occurrences
Start 3101501
End 3101516
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCAGAACGCAAAAA(5' tail) CGGGCC(5' stem) CGAA(loop) GGCCCG(3' stem) TTCCTGTTTTGCTGG(3' tail). Confidence: 100. opp_overlap 3101501 3101495

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685