Motif View

Internal ID 17685376
Source Database TransTermHP TERM 941
Feature Type terminator
Name
Rho-independent transcription terminator TERM 941
Sequence GCTTCGGCCAGGCTCGCCTGGCCGAACGC
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Start 4397015
End 4397043
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGCTTCGCAAAAAA(5' tail) GCGTTCGGCCAGG(5' stem) CGAG(loop) CCTGGCCGAA-GC(3' stem) GGGACCGCGGCGAAT(3' tail). Confidence: 100. gap 1, overlap 4397016

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685