Motif View

Internal ID 17685668
Source Database TransTermHP TERM 341
Feature Type terminator
Name
Rho-independent transcription terminator TERM 341
Sequence CCCGATCAGGTGACTGATCGGG
Look for more occurrences
Start 1383663
End 1383684
Strand +
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGATAAACAAAAA(5' tail) CCCGATCAG(5' stem) GTGA(loop) CTGATCGGG(3' stem) TTTTTTGTTTTCGCG(3' tail). Confidence: 100. opp_overlap 1383663 1383648, overlap 1383648

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685