Motif View

Internal ID 17685840
Source Database TransTermHP TERM 578
Feature Type terminator
Name
Rho-independent transcription terminator TERM 578
Sequence CTTGTAGTGGAATCACTACAAG
Look for more occurrences
Start 2565402
End 2565423
Strand +
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACCTAGAGTGGCTG(5' tail) CTTGTAGTG(5' stem) GAAT(loop) CACTACAAG(3' stem) TTTTTGGTCGATATC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685