Motif View

Internal ID 17685900
Source Database TransTermHP TERM 662
Feature Type terminator
Name
Rho-independent transcription terminator TERM 662
Sequence GGGGCGACCGTGTTGGTCGCCCC
Look for more occurrences
Start 2965092
End 2965114
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCAACAATAAAAAA(5' tail) GGGGCGACCA(5' stem) ACA(loop) CGGTCGCCCC(3' stem) TTTTTTGCGATTGCC(3' tail). Confidence: 100. opp_overlap 2965092

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685