Motif View

Internal ID 17686393
Source Database TransTermHP TERM 1321
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1321
Sequence GCCCTGATCTTTCGATCAGGGC
Look for more occurrences
Start 5699545
End 5699566
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGGACATGAAAAA(5' tail) GCCCTGATC(5' stem) GAAA(loop) GATCAGGGC(3' stem) TTTTTTGTTTGCTTG(3' tail). Confidence: 100. opp_overlap 5699545

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685