Motif View

Internal ID 17686612
Source Database TransTermHP TERM 163
Feature Type terminator
Name
Rho-independent transcription terminator TERM 163
Sequence GGCCGCGAAGATCGCGGCC
Look for more occurrences
Start 653377
End 653395
Strand +
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGTGACAAACGACAA(5' tail) GGCCGCGA(5' stem) AGA(loop) TCGCGGCC(3' stem) TTGTCGTATCTGGGT(3' tail). Confidence: 90. opp_overlap 653371, overlap 653371

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685