Motif View

Internal ID 17687179
Source Database TransTermHP TERM 1039
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1039
Sequence CGCCACCTGACCTTCGGTCACGTGGCG
Look for more occurrences
Start 4609431
End 4609457
Strand +
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCGCCTGCCCGCAA(5' tail) CGCCACCTGACC(5' stem) TTC(loop) GGTCACGTGGCG(3' stem) TTTTTTCTGTTGCCT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685