Motif View

Internal ID 17687375
Source Database TransTermHP TERM 1315
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1315
Sequence GGCCATCCCCCCGGATGGCC
Look for more occurrences
Start 5637622
End 5637641
Strand -
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCATAAAAAAA(5' tail) GGCCATCC(5' stem) GGGG(loop) GGATGGCC(3' stem) TTCAAAAACAAAAGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685