Motif View

Internal ID 17687598
Source Database TransTermHP TERM 1656
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1656
Sequence GCTCGCCGGCAGGGTGCCGGCGAGC
Look for more occurrences
Start 6796781
End 6796805
Strand -
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGCGACTGAAACA(5' tail) GCTCGCCGGCA(5' stem) CCC(loop) TGCCGGCGAGC(3' stem) GGCAAGGTCAATGCC(3' tail). Confidence: 100. overlap 6796737 6796779

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685