Motif View

Internal ID 17687735
Source Database TransTermHP TERM 183
Feature Type terminator
Name
Rho-independent transcription terminator TERM 183
Sequence CCGCTTCCGTCACCGGAAGCGG
Look for more occurrences
Start 795713
End 795734
Strand -
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCGCATAAAAAAA(5' tail) CCGCTTCCG(5' stem) GTGA(loop) CGGAAGCGG(3' stem) TTTTTGATTTACACC(3' tail). Confidence: 100. opp_overlap 795713

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685