Motif View

Internal ID 17688137
Source Database TransTermHP TERM 778
Feature Type terminator
Name
Rho-independent transcription terminator TERM 778
Sequence CCCGACGCTAAGTCGGG
Look for more occurrences
Start 3496519
End 3496535
Strand -
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCCTTATAAAAAA(5' tail) CCCGAC(5' stem) TTAGC(loop) GTCGGG(3' stem) TTTTTCCAAGACCAG(3' tail). Confidence: 100. opp_overlap 3496519 3496532, overlap 3496506

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685