Motif View

Internal ID 17688492
Source Database TransTermHP TERM 26
Feature Type terminator
Name
Rho-independent transcription terminator TERM 26
Sequence CCCGGCCTTGGCCGGG
Look for more occurrences
Start 111841
End 111856
Strand +
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAAAAACGAAAAAA(5' tail) CCCGGC(5' stem) CTTG(loop) GCCGGG(3' stem) TTTTTTATTGCCTGG(3' tail). Confidence: 100. opp_overlap 111834 111824 111841, overlap 111834

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685