Motif View

Internal ID 17688493
Source Database TransTermHP TERM 29
Feature Type terminator
Name
Rho-independent transcription terminator TERM 29
Sequence ACTTTGCGGGCCATTCAGCAATGAATGGCCCGCAAGGG
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Start 136269
End 136306
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTTCCGGCTGTAAA(5' tail) CCCTTGCGGGCCATTCA(5' stem) TTGC(loop) TGAATGGCCCGCAAAGT(3' stem) CTCTGGAGTCAGCTA(3' tail). Confidence: 100. opp_overlap 136270, overlap 136270

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685