Motif View

Internal ID 17688509
Source Database TransTermHP TERM 51
Feature Type terminator
Name
Rho-independent transcription terminator TERM 51
Sequence CAAGGCCCGGCGCAATGCCGGGCCTTG
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Start 196583
End 196609
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAAAAGCAGAAACGA(5' tail) CAAGGCCCGGCA(5' stem) TTG(loop) CGCCGGGCCTTG(3' stem) TGGATAAAACGCCCC(3' tail). Confidence: 95. opp_overlap 196586, overlap 196580 196573 196567

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685