Motif View

Internal ID 17688581
Source Database TransTermHP TERM 157
Feature Type terminator
Name
Rho-independent transcription terminator TERM 157
Sequence CCGCCCTCCGGGGCGG
Look for more occurrences
Start 488791
End 488806
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGAGGAATGAAAAA(5' tail) CCGCCC(5' stem) CGGA(loop) GGGCGG(3' stem) TTTCTTCAACGCTTG(3' tail). Confidence: 100. opp_overlap 488791, overlap 488784

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685