Motif View

Internal ID 17688839
Source Database TransTermHP TERM 532
Feature Type terminator
Name
Rho-independent transcription terminator TERM 532
Sequence GAGCCCCGCTGATGCGGGGCTC
Look for more occurrences
Start 1702886
End 1702907
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCCATCCAAATGAA(5' tail) GAGCCCCGC(5' stem) ATCA(loop) GCGGGGCTC(3' stem) TTGCGGATCAGACCA(3' tail). Confidence: 100. opp_overlap 1702888, overlap 1702882

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685