Strain Overview | |
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Organism Name | Pseudomonas fluorescens SBW25 - Assembly GCF_000009225.2 |
Species | Pseudomonas fluorescens |
Strain | SBW25 |
Description/Title | Non-tumor DNA sample from Blood of a human female participant in the dbGaP study "Women's Health Initiative" |
Annotated Genes | 6106 |
Partial Genes | 5 |
Host Information | |
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Host Species Taxonomic Name | Beta vulgaris subsp. vulgaris |
Host Species Common Name | sugar beet |
Host Species Taxonomy ID | 3555 |
Geographic Location | |
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Location Name | United Kingdom: Oxfordshire |
Isolation Source | leaf surface |
Sample Provider | |
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Name | |
Institution | Wellcome Trust Sanger Institute |
Date Collected | 1989 |
Database | Scheme | Sequence Type | Alleles | ||||||||||
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PubMLST | pfluorescens | 1 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMEA2272316 |
NCBI Taxonomy ID | 9606 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas fluorescens SBW25 chromosome, complete genome. |
Feature | Count |
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gene | 6106 |
CDS | 5921 |
tRNA | 66 |
rRNA | 16 |
misc_RNA | 15 |
Localization | Count |
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Cytoplasmic | 2590 |
Cytoplasmic Membrane | 1443 |
Periplasmic | 210 |
Outer Membrane | 160 |
Extracellular | 68 |
Unknown | 1311 |
Unknown (This protein may have multiple localization sites) | 139 |
Flagellar | 18 |
Fimbrial | 6 |
T3SS | 2 |
Name | Length | GC | |
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Pseudomonas fluorescens SBW25 chromosome, complete genome. | 6722539 bp | 60.5% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |