Pseudomonas fluorescens SBW25

Strain Overview
Organism Name Pseudomonas fluorescens SBW25 - Assembly GCF_000009225.2
Species Pseudomonas fluorescens
Strain SBW25
Description/Title Non-tumor DNA sample from Blood of a human female participant in the dbGaP study "Women's Health Initiative"
Annotated Genes 6106
Partial Genes 5
Host Information
Host Species Taxonomic Name Beta vulgaris subsp. vulgaris
Host Species Common Name sugar beet
Host Species Taxonomy ID 3555
Geographic Location
Location Name United Kingdom: Oxfordshire
Isolation Source leaf surface
Sample Provider
Name
E-mail
Institution Wellcome Trust Sanger Institute
Date Collected 1989

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens 1
glnS
1		 recA
1		 glnS
1		 rpoD
1		 ileS
1		 glnS
1		 rpoB
1		 gyrB
1		 glnS
1		 nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000009225.2
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2272316
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens SBW25 chromosome, complete genome.

Annotated Features

Feature Count
gene 6106
CDS 5921
tRNA 66
rRNA 16
misc_RNA 15

Subcellular Localization

Localization Count
Cytoplasmic 2590
Cytoplasmic Membrane 1443
Periplasmic 210
Outer Membrane 160
Extracellular 68
Unknown 1311
Unknown (This protein may have multiple localization sites) 139
Flagellar 18
Fimbrial 6
T3SS 2

Replicons

Name Length GC
Pseudomonas fluorescens SBW25 chromosome, complete genome. 6722539 bp 60.5%
Replicon details

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Genomic ORF DNA Intergenic Amino Acid

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TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs