Strain Overview | |
---|---|
Organism Name | Pseudomonas putida GB-1 |
Species | Pseudomonas putida |
Strain | GB-1 |
Description/Title | Sample of PSEUDOMONAS PUTIDA GB-1 |
Annotated Genes | 5529 |
Partial Genes |
Host Information |
---|
Geographic Location | |
---|---|
Isolation Source | fresh water |
Sample Provider | |
---|---|
Name | |
Institution | Joint Genome Institute, U.S. Department of Energy |
Date Collected |
Database | Scheme | Sequence Type | Alleles | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PubMLST | pputida | - |
|
||||||||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN00623059 |
NCBI Taxonomy ID | 76869 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
---|---|
Pseudomonas putida GB-1 chromosome, complete genome. |
Feature | Count |
---|---|
gene | 5529 |
CDS | 5408 |
tRNA | 74 |
rRNA | 22 |
pseudo | 20 |
ncRNA | 2 |
misc_RNA | 2 |
tmRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2400 |
Cytoplasmic Membrane | 1256 |
Periplasmic | 194 |
Outer Membrane | 162 |
Extracellular | 44 |
Unknown | 1215 |
Unknown (This protein may have multiple localization sites) | 137 |
Flagellar | 17 |
Fimbrial | 3 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas putida GB-1 chromosome, complete genome. | 6078430 bp | 61.9% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |