Pseudomonas putida GB-1

Strain Overview
Organism Name Pseudomonas putida GB-1
Species Pseudomonas putida
Strain GB-1
Description/Title Sample of PSEUDOMONAS PUTIDA GB-1
Annotated Genes 5529
Partial Genes
Host Information
Geographic Location
Isolation Source fresh water
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
argS
39
ileS
15
rpoB
4
argS
39
recA
14
nuoC
46
gyrB
48
argS
39
ppsA
11
argS
39
rpoD
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN00623059
NCBI Taxonomy ID 76869
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas putida GB-1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5529
CDS 5408
tRNA 74
rRNA 22
pseudo 20
misc_RNA 2
ncRNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2400
Cytoplasmic Membrane 1256
Periplasmic 194
Outer Membrane 162
Extracellular 44
Unknown 1215
Unknown (This protein may have multiple localization sites) 137
Flagellar 17
Fimbrial 3

Replicons

Name Length GC
Pseudomonas putida GB-1 chromosome, complete genome. 6078430 bp 61.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs