Pseudomonas putida GB-1

Strain Overview
Organism Name Pseudomonas putida GB-1
Species Pseudomonas putida
Strain GB-1
Description/Title Sample of PSEUDOMONAS PUTIDA GB-1
Annotated Genes 5529
Partial Genes
Host Information
Geographic Location
Isolation Source fresh water
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
argS
39		 ppsA
11		 gyrB
48		 recA
14		 ileS
15		 rpoD
14		 rpoB
4		 nuoC
46
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000019125.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN00623059
NCBI Taxonomy ID 76869
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida GB-1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5509
CDS 5408
tRNA 74
rRNA 22
pseudo 20
misc_RNA 2
ncRNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2400
Cytoplasmic Membrane 1256
Periplasmic 194
Outer Membrane 162
Extracellular 44
Unknown 1215
Unknown (This protein may have multiple localization sites) 137
Flagellar 17
Fimbrial 3

Replicons

Name Length GC
Pseudomonas putida GB-1 chromosome, complete genome. 6078430 bp 61.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs