Pseudomonas putida GB-1

Strain Overview
Organism Name Pseudomonas putida GB-1
Species Pseudomonas putida
Strain GB-1
Description/Title Sample of PSEUDOMONAS PUTIDA GB-1
Annotated Genes 5529
Partial Genes
Host Information
Geographic Location
Isolation Source fresh water
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
argS
39		 recA
14		 rpoB
4		 gyrB
48		 argS
39		 nuoC
46		 argS
39		 ileS
15		 argS
39		 rpoD
14		 argS
39		 ppsA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000019125.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN00623059
NCBI Taxonomy ID 76869
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida GB-1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5529
CDS 5408
tRNA 74
rRNA 22
pseudo 20
ncRNA 2
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2400
Cytoplasmic Membrane 1256
Periplasmic 194
Outer Membrane 162
Extracellular 44
Unknown 1215
Unknown (This protein may have multiple localization sites) 137
Flagellar 17
Fimbrial 3

Replicons

Name Length GC
Pseudomonas putida GB-1 chromosome, complete genome. 6078430 bp 61.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs