Pseudomonas putida S16

Strain Overview
Organism Name Pseudomonas putida S16
Species Pseudomonas putida
Strain S16
Description/Title Sample from Pseudomonas putida S16
Annotated Genes 5369
Partial Genes
Host Information
Geographic Location
Location Name China: Shandong
Isolation Source soil from field under continuous tobacco cropping

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
nuoC
50		 recA
34		 rpoB
7		 ileS
21		 rpoD
31		 argS
42		 ppsA
22		 gyrB
51
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000219705.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603862
NCBI Taxonomy ID 1042876
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida S16 chromosome, complete genome.

Annotated Features

Feature Count
gene 5307
CDS 5218
tRNA 70
pseudo 62
rRNA 19

Subcellular Localization

Localization Count
Cytoplasmic 2400
Cytoplasmic Membrane 1207
Periplasmic 158
Outer Membrane 122
Extracellular 31
Unknown 1183
Unknown (This protein may have multiple localization sites) 117
Flagellar 17
Fimbrial 3

Replicons

Name Length GC
Pseudomonas putida S16 chromosome, complete genome. 5984790 bp 62.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs