Pseudomonas stutzeri RCH2

Strain Overview
Organism Name Pseudomonas stutzeri RCH2
Species Pseudomonas stutzeri
Strain RCH2
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas stutzeri RCH2
Annotated Genes 4404
Partial Genes
Host Information
Geographic Location
Location Name USA: WA, Hanford 100 Area site
Isolation Source Cr-contaminated aquifer
Environmental Feature (?) not provided; submitted under MIGS 2.1
Environmental Material (?) not provided; submitted under MIGS 2.1
Sample Provider
Name Susan Hua
E-mail shua@lbl.gov
Institution Joint Genome Institute
Date Collected Missing

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02232046
NCBI Taxonomy ID 644801
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas stutzeri RCH2 chromosome, complete genome.
Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence.
Pseudomonas stutzeri RCH2 plasmid pPSEST02, complete sequence.
Pseudomonas stutzeri RCH2 plasmid pPSEST03, complete sequence.

Annotated Features

Feature Count
gene 4404
CDS 4264
tRNA 59
pseudo 57
ncRNA 12
rRNA 12

Subcellular Localization

Localization Count
Cytoplasmic 1920
Cytoplasmic Membrane 1065
Periplasmic 118
Outer Membrane 88
Extracellular 44
Unknown 908
Unknown (This protein may have multiple localization sites) 121
Flagellar 33
Fimbrial 5

Replicons

Name Length GC
Pseudomonas stutzeri RCH2 chromosome, complete genome. 4575057 bp 62.5%
Replicon details
Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence. 12763 bp 53.9%
Replicon details
Pseudomonas stutzeri RCH2 plasmid pPSEST02, complete sequence. 9865 bp 60.3%
Replicon details
Pseudomonas stutzeri RCH2 plasmid pPSEST03, complete sequence. 2804 bp 61.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs