Strain Overview | |
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Organism Name | Pseudomonas stutzeri RCH2 |
Species | Pseudomonas stutzeri |
Strain | RCH2 |
Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas stutzeri RCH2 |
Annotated Genes | 4404 |
Partial Genes |
Host Information |
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Geographic Location | |
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Location Name | USA: WA, Hanford 100 Area site |
Isolation Source | Cr-contaminated aquifer |
Environmental Feature (?) | not provided; submitted under MIGS 2.1 |
Environmental Material (?) | not provided; submitted under MIGS 2.1 |
Sample Provider | |
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Name | Susan Hua |
shua@lbl.gov | |
Institution | Joint Genome Institute |
Date Collected | Missing |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02232046 |
NCBI Taxonomy ID | 644801 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 4347 |
CDS | 4264 |
tRNA | 59 |
pseudo | 57 |
ncRNA | 12 |
rRNA | 12 |
Localization | Count |
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Cytoplasmic | 1920 |
Cytoplasmic Membrane | 1065 |
Periplasmic | 118 |
Outer Membrane | 88 |
Extracellular | 44 |
Unknown | 908 |
Unknown (This protein may have multiple localization sites) | 121 |
Flagellar | 33 |
Fimbrial | 5 |
Name | Length | GC | |
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Pseudomonas stutzeri RCH2 chromosome, complete genome. | 4575057 bp | 62.5% |
Replicon details
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Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence. | 12763 bp | 53.9% |
Replicon details
|
Pseudomonas stutzeri RCH2 plasmid pPSEST02, complete sequence. | 9865 bp | 60.3% |
Replicon details
|
Pseudomonas stutzeri RCH2 plasmid pPSEST03, complete sequence. | 2804 bp | 61.8% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |