Pseudomonas aeruginosa PAO1, PA1149

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
PvdS binding site 1243321 1243348 +
18363796 Details
Shine-Dalgarno sequence 1243127 1243129 - ECO:0000256
match to sequence model evidence used in automatic assertion
Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
PtxR binding site 1242888 1242897 - ECO:0000314
direct assay evidence used in manual assertion
16194235 Details
Inverted repeat: TCGGCGCTGG-N27-CCAGCGCCGA 1242883 1242929 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
PvdS binding site 1242642 1242650 -
12207696 Details
the control region upstream of toxA gene 1242588 1242662 -
2496110 Details
Vfr binding site 1242644 1242665 - ECO:0000314
direct assay evidence used in manual assertion
17159200 Details