Pseudomonas aeruginosa PAO1, PA1172 (napC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008940 nitrate reductase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 7639719 Reviewed by curator
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02161
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019333 denitrification pathway
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02161
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02161
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Nitrogen metabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region IPR005126 NapC/NirT cytochrome c, N-terminal 18 192 2.4E-78
PANTHER PTHR30333 CYTOCHROME C-TYPE PROTEIN - - 15 196 5.0E-69
Gene3D G3DSA:1.10.3820.10 - IPR038266 NapC/NirT cytochrome c superfamily 18 195 7.8E-38
FunFam G3DSA:1.10.3820.10:FF:000001 Cytochrome c-type protein - - 16 196 3.0E-87
PIRSF PIRSF000013 4_hem_cytochrm_NapC IPR024717 Denitrification system component NapC/NirT/NrfH 1 198 7.4E-109
SUPERFAMILY SSF48695 Multiheme cytochromes IPR036280 Multiheme cytochrome superfamily 15 198 5.85E-67
NCBIfam TIGR02161 JCVI: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT 8 193 3.0E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.