Pseudomonas aeruginosa PAO1, PA1429
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GACCTGTGGG-N58-CCCACAGGTC | 1554460 | 1554537 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGCGGCACCTCGC-N8-GCGAGGTGCCGCG | 1554852 | 1554885 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGTTGCGGCG-N94-CGCCGCAACG | 1554954 | 1555067 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 1555003 | 1555006 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGTTGCGGCG-N94-CGCCGCAACG | 1554954 | 1555067 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GGCTGGCCCTG-N48-CAGGGCCAGCC | 1555763 | 1555832 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Vfr binding site | 1557882 | 1557903 | + |
|
9190808 | Details |
| -35 region | 1557901 | 1557906 | + |
|
9190808 | Details |
| lux box | 1557923 | 1557943 | + |
|
9190808 | Details |
| -10 region | 1557931 | 1557936 | + |
|
9190808 | Details |
| transcriptional initiation site (+1) | 1557940 | 1557940 | + |
|
9190808 | Details |
| transcriptional initiation site (+1) | 1557970 | 1557970 | + |
|
9190808 | Details |
| potential lux box upstream of lasR gene | 1557922 | 1557971 | + |
|
9190808 | Details |
| Vfr box upstream of lasR gene (CCS) | 1557882 | 1557921 | + |
|
9190808 | Details |
| lasR promoter P2 | 1557896 | 1557945 | + |
|
9190808 | Details |
| lasR promoter P1 | 1557926 | 1557975 | + |
|
9190808 | Details |
| Vfr protected region upstream of lasR gene | 1557882 | 1558131 | + |
|
17159200 | Details |
| Vfr binding site | 1557882 | 1557903 | + |
ECO:0000314
direct assay evidence used in manual assertion |
17159200 | Details |
| AmpR binding site | 1558140 | 1558153 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22275523 | Details |
| AmpR binding site | 1558120 | 1558133 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24157832 | Details |
| Palindrome | 1557882 | 1557903 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |