Pseudomonas aeruginosa PAO1, PA1584 (sdhB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P07014
 ECO:0000250
sequence similarity evidence used in manual assertion		 3008846 Reviewed by curator
Molecular Function GO:0051536 iron-sulfur cluster binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P07014
 ECO:0000250
sequence similarity evidence used in manual assertion		 2997176 Reviewed by curator
Molecular Function GO:0051537 2 iron, 2 sulfur cluster binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P07014
 ECO:0000250
sequence similarity evidence used in manual assertion		 1312028 Reviewed by curator
Molecular Function GO:0009055 electron transfer activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P07014
 ECO:0000250
sequence similarity evidence used in manual assertion		 16864590 Reviewed by curator
Molecular Function GO:0051538 3 iron, 4 sulfur cluster binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P07014
 ECO:0000250
sequence similarity evidence used in manual assertion		 2987254 Reviewed by curator
Biological Process GO:0006099 tricarboxylic acid cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13085
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00650 Butanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc TCA TCA cycle I (prokaryotic) 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Citrate cycle (TCA cycle) ECO:0000037
not_recorded
PseudoCyc GLYCOLYSIS-TCA-GLYOX-BYPASS superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Oxidative phosphorylation ECO:0000037
not_recorded
KEGG pae00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc TCA-GLYOX-BYPASS superpathway of glyoxylate bypass and TCA 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11921 SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN - - 3 231 3.5E-95
Pfam PF13534 4Fe-4S dicluster domain - - 145 218 2.6E-9
Gene3D G3DSA:3.10.20.30 - IPR012675 Beta-grasp domain superfamily 1 104 2.7E-33
Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain IPR025192 Succinate dehydogenase/fumarate reductase N-terminal 4 108 7.9E-31
SUPERFAMILY SSF54292 2Fe-2S ferredoxin-like IPR036010 2Fe-2S ferredoxin-like superfamily 2 104 3.3E-26
FunFam G3DSA:1.10.1060.10:FF:000001 Succinate dehydrogenase iron-sulfur subunit SdhB - - 105 235 5.6E-67
SUPERFAMILY SSF46548 alpha-helical ferredoxin - - 105 232 2.27E-38
NCBIfam TIGR00384 JCVI: succinate dehydrogenase and fumarate reductase iron-sulfur protein IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein 6 227 1.3E-83
FunFam G3DSA:3.10.20.30:FF:000004 Succinate dehydrogenase iron-sulfur subunit - - 1 104 1.5E-55
Gene3D G3DSA:1.10.1060.10 - IPR009051 Alpha-helical ferredoxin 105 235 5.0E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.