Pseudomonas aeruginosa PAO1, PA1669 (icmF2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0033103 protein secretion by the type VI secretion system
IGC
Inferred from Genomic Context 		ECO:0000317
genomic context evidence used in manual assertion		 18524912 Reviewed by curator
Biological Process GO:0033103 protein secretion by the type VI secretion system
IEA
Inferred from Electronic Annotation 		ECO:0000203
automatic assertion		 18524912 Reviewed by curator

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class
Membrane proteins Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF14331 IcmF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 198 452 1.1E-78
PANTHER PTHR36153 INNER MEMBRANE PROTEIN-RELATED - - 1 1175 0.0
Coils Coil Coil - - 475 495 -
Pfam PF06744 Type VI secretion protein IcmF C2-like domain IPR010623 Type VI secretion system IcmF, C-terminal 1050 1154 1.9E-22
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 117 332 1.16E-9
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 507 792 1.2E-71
CDD cd00882 Ras_like_GTPase - - 135 274 0.00187614
NCBIfam TIGR03348 JCVI: type VI secretion system membrane subunit TssM IPR017731 Type VI secretion system protein TssM1-like 18 1172 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.