Pseudomonas aeruginosa PAO1, PA1816 (dnaQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0043845 DNA polymerase III, proofreading complex
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9705512 Reviewed by curator
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06131
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06131
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06131
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Nucleotide biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Purine metabolism ECO:0000037
not_recorded
KEGG pae03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Pyrimidine metabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 2 176 1.2E-49
NCBIfam TIGR01406 JCVI: DNA polymerase III subunit epsilon IPR006309 DNA polymerase 3, epsilon subunit 2 238 3.8E-88
PANTHER PTHR30231 DNA POLYMERASE III SUBUNIT EPSILON - - 3 194 6.8E-38
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 1 183 4.3E-58
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 4 167 4.8E-39
NCBIfam TIGR00573 JCVI: exonuclease, DNA polymerase III, epsilon subunit family IPR006054 DNA polymerase III epsilon subunit, exonuclease domain 3 178 4.9E-64
FunFam G3DSA:3.30.420.10:FF:000012 DNA polymerase III subunit epsilon - - 1 181 3.8E-82
CDD cd06131 DNA_pol_III_epsilon_Ecoli_like IPR006309 DNA polymerase 3, epsilon subunit 4 171 2.90515E-107
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 1 177 2.64E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.