Pseudomonas aeruginosa PAO1, PA2258 (ptxR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 2487459 | 2487459 | - |
|
11222621 | Details |
| PvdS binding site | 2487461 | 2487486 | - |
|
11222621 | Details |
| -10 region | 2487472 | 2487477 | - |
|
11222621 | Details |
| Vfr binding site | 2487479 | 2487503 | - |
|
11222621 | Details |
| -35 region | 2487494 | 2487499 | - |
|
11222621 | Details |
| PtxS binding site | 2487772 | 2487785 | + |
|
10438759 | Details |
| transcriptional initiation site (+1) | 2487649 | 2487649 | - |
|
Details | |
| -10 region | 2487660 | 2487665 | - |
|
Details | |
| -35 region | 2487684 | 2487689 | - |
|
Details | |
| MvaT binding site | 2487671 | 2487695 | + |
|
15528665 | Details |
| P1 ptxR promotor | 2487533 | 2487593 | - |
|
Details | |
| P2 ptxR promotor | 2487456 | 2487495 | - |
|
Details | |
| PtxS retarded fragment upstream of ptxS | 2487746 | 2487797 | + |
|
Details | |
| 304-bp retarded fragment at the ptxS gene | 2487545 | 2487848 | + |
|
10438759 | Details |
| 103-bp retarded fragment at the ptxS gene | 2487745 | 2487848 | + |
|
10438759 | Details |
| 52-bp retarded fragment at the ptxS gene | 2487746 | 2487797 | + |
|
10438759 | Details |
| PtxS protected fragment at the ptxS gene | 2487763 | 2487796 | + |
|
10438759 | Details |
| PtxS retarded fragment at the ptxS gene | 2487746 | 2487797 | + |
|
10894751 | Details |
| ptxR promoter TA | 2487392 | 2487641 | - |
|
14569286 | Details |
| ptxR promoter TB | 2487436 | 2487685 | - |
|
14569286 | Details |
| MvaT retarded fragment upstream of ptxS gene | 2487545 | 2487794 | + |
|
15528665 | Details |
| PtxS operator site (OP1) | 2487772 | 2487785 | + |
|
10931350 | Details |
| transcription initiation site | 2487459 | 2487459 | - |
|
9852033 | Details |
| -10 element | 2487472 | 2487477 | - |
|
9852033 | Details |
| -30 region | 2487494 | 2487499 | - |
|
9852033 | Details |
| Vfr binding region | 2487479 | 2487503 | - |
|
18227247 | Details |
| transcription initiation site | 2487649 | 2487649 | - |
|
9852033 | Details |
| -10 element | 2487660 | 2487665 | - |
|
9852033 | Details |
| -30 element | 2487684 | 2487689 | - |
|
9852033 | Details |
| Vfr binding site | 2487483 | 2487503 | - |
ECO:0000314
direct assay evidence used in manual assertion |
18227247 | Details |
| OxyR binding site | 2487647 | 2487661 | - |
ECO:0000314
direct assay evidence used in manual assertion |
10913087 | Details |
| PtxS binding site | 2487772 | 2487785 | + |
ECO:0000314
direct assay evidence used in manual assertion |
9791103 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGTAGGGCGAATAAC-N56-GTTATTCGCCCTACG | 2486114 | 2486199 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTTATCCGCCGCC-N13-GGCGGCGGATAAC | 2486137 | 2486175 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GGCGGCGGATAAC-N91-GTTATCCGCCGCC | 2486163 | 2486279 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTTATTCGCCCTACG-N44-CGTAGGGCGAATAAC | 2486185 | 2486258 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTAGGGCGAATAAC-N56-GTTATTCGCCCTAC | 2486245 | 2486328 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTTATCCGCCGCC-N13-GGCGGCGGATAAC | 2486267 | 2486305 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |