Pseudomonas aeruginosa PAO1, PA3114 (truA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006220 pyrimidine nucleotide metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0003941 L-serine ammonia-lyase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd02570
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd02570
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd02570
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd02570
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Pyrimidine metabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF001430 PSU-A IPR001406 Pseudouridine synthase I, TruA 17 277 6.8E-74
Pfam PF01416 tRNA pseudouridine synthase IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain 25 120 4.1E-5
Hamap MF_00171 tRNA pseudouridine synthase A [truA]. IPR001406 Pseudouridine synthase I, TruA 18 261 34.619537
Gene3D G3DSA:3.30.70.660 - IPR020095 Pseudouridine synthase I, TruA, C-terminal 123 260 9.8E-43
FunFam G3DSA:3.30.70.580:FF:000001 tRNA pseudouridine synthase A - - 17 122 8.0E-41
Pfam PF01416 tRNA pseudouridine synthase IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain 160 262 7.4E-31
Gene3D G3DSA:3.30.70.580 - IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal 15 122 2.4E-31
NCBIfam TIGR00071 JCVI: tRNA pseudouridine(38-40) synthase TruA IPR001406 Pseudouridine synthase I, TruA 19 256 5.1E-66
CDD cd02570 PseudoU_synth_EcTruA IPR001406 Pseudouridine synthase I, TruA 22 261 0.0
PANTHER PTHR11142 PSEUDOURIDYLATE SYNTHASE IPR001406 Pseudouridine synthase I, TruA 17 265 7.2E-58
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 18 275 4.32E-91

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.