Pseudomonas aeruginosa PAO1, PA3480
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GGCAGCCGTCG-N1-CGACGGCTGCC | 3894068 | 3894090 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCCGCTGTCG-N20-CGACAGCGGC | 3894237 | 3894276 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GGTGCTCGGC-N45-GCCGAGCACC | 3894341 | 3894405 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 882 | 3894068 | 3894090 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AlgR binding site | 3893929 | 3893937 | - |
|
17766417 | Details |
| AlgR binding site | 3893924 | 3893943 | - |
ECO:0000314
direct assay evidence used in manual assertion |
17766417 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 3893235 | 3893235 | - |
|
10570171 | Details |
| las box | 3893268 | 3893287 | - |
|
10570171 | Details |
| rhlAB major promoter | 3893231 | 3893283 | - |
|
9294432 | Details |
| rhlAB minor promoter | 3893187 | 3893236 | - |
|
9294432 | Details |
| putative RpoN promoter | 3893125 | 3893200 | - |
|
9294432 | Details |
| RhlR retarded fragment upstream of rhlAB operon | 3893134 | 3893383 | - |
|
14526008 | Details |
| RhlR protected fragment upstream of rhlAB operon | 3893047 | 3893296 | - |
|
14526008 | Details |
| LasR binding site | 3893271 | 3893286 | - |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| RhlR binding site | 3893269 | 3893288 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24935161 | Details |
| Rho-independent transcription terminator TERM 881 | 3893390 | 3893406 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Shine-Dalgarno sequence | 3893015 | 3893019 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |