Pseudomonas aeruginosa PAO1, PA3806

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0070475 rRNA base methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00048
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0030488 tRNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00048
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008173 RNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 112 280 1.5E-15
Gene3D G3DSA:1.10.150.530 - - - 1 69 7.6E-29
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 72 358 1.3E-117
NCBIfam TIGR00048 JCVI: 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN IPR027492 Dual-specificity RNA methyltransferase RlmN 5 359 0.0
PIRSF PIRSF006004 Cfr IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr 4 368 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 108 320 1.03E-13
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 6 361 0.0
FunFam G3DSA:3.20.20.70:FF:000008 Dual-specificity RNA methyltransferase RlmN - - 70 351 0.0
FunFam G3DSA:1.10.150.530:FF:000003 Dual-specificity RNA methyltransferase RlmN - - 4 69 4.5E-34
PANTHER PTHR30544 23S RRNA METHYLTRANSFERASE IPR040072 Methyltransferase (Class A) 5 357 5.3E-124
SFLD SFLDF00275 adenosine C2 methyltransferase (RlmN-like) IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr 6 361 0.0
CDD cd01335 Radical_SAM - - 116 317 7.27579E-10
Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. IPR027492 Dual-specificity RNA methyltransferase RlmN 8 355 73.212883

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.