Pseudomonas aeruginosa PAO1, PA3842 (spcS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0030254 protein secretion by the type III secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF011271
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class
Chaperones & heat shock proteins Other PAO1 genes in this class
Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Type III Secretion ECO:0000037
not_recorded
PseudoCAP Type III secretion system ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF011271 SycE IPR005416 Type III secretion chaperone SycE 1 116 2.4E-65
Gene3D G3DSA:3.30.1460.10 - - - 1 116 1.1E-44
CDD cd17029 T3SC_IA_SycE_SpcS-like - - 5 116 6.74447E-48
PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature IPR005416 Type III secretion chaperone SycE 79 97 5.9E-51
Pfam PF05932 Tir chaperone protein (CesT) family IPR010261 Tir chaperone protein (CesT) family 8 116 1.6E-25
SUPERFAMILY SSF69635 Type III secretory system chaperone-like - - 5 115 6.67E-40
PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature IPR005416 Type III secretion chaperone SycE 97 115 5.9E-51
PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature IPR005416 Type III secretion chaperone SycE 30 51 5.9E-51
Coils Coil Coil - - 98 116 -
PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature IPR005416 Type III secretion chaperone SycE 5 28 5.9E-51
PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature IPR005416 Type III secretion chaperone SycE 60 76 5.9E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.