Pseudomonas aeruginosa PAO1, PA4569 (ispB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006091 generation of precursor metabolites and energy
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0051188 obsolete cofactor biosynthetic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00685
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Biosynthesis of cofactors, prosthetic groups and carriers Other PAO1 genes in this class
Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Ubiquinone biosynthesis ECO:0000037
not_recorded
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR12001 GERANYLGERANYL PYROPHOSPHATE SYNTHASE - - 5 320 6.9E-74
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase IPR008949 Isoprenoid synthase domain superfamily 1 321 1.7E-101
FunFam G3DSA:1.10.600.10:FF:000002 Octaprenyl diphosphate synthase - - 1 322 2.6E-120
Pfam PF00348 Polyprenyl synthetase IPR000092 Polyprenyl synthetase 31 270 4.0E-71
SFLD SFLDS00005 Isoprenoid Synthase Type I - - 37 320 0.0
CDD cd00685 Trans_IPPS_HT IPR000092 Polyprenyl synthetase 27 320 1.96921E-100
SUPERFAMILY SSF48576 Terpenoid synthases IPR008949 Isoprenoid synthase domain superfamily 5 321 1.12E-97

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.