Pseudomonas aeruginosa PAO1, PA4778 (cueR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 20233934 Reviewed by curator
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 20233934 Reviewed by curator
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02044
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02044
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 13 26 1.0E-7
PANTHER PTHR30204 REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR IPR047057 MerR transcriptional regulator 1 113 1.1E-26
Coils Coil Coil - - 88 111 -
Pfam PF00376 MerR family regulatory protein IPR000551 MerR-type HTH domain 2 39 5.0E-16
Gene3D G3DSA:1.10.1660.10 - - - 1 125 1.3E-37
SMART SM00422 merrmega3 IPR000551 MerR-type HTH domain 1 70 1.0E-32
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 2 13 1.0E-7
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 1 126 5.13E-40
Pfam PF09278 MerR, DNA binding IPR015358 Transcription regulator MerR, DNA binding 44 108 1.0E-20
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 37 57 1.0E-7
CDD cd01108 HTH_CueR IPR011789 Cu(I)-responsive transcriptional regulator 1 127 1.09218E-77
NCBIfam TIGR02044 JCVI: Cu(I)-responsive transcriptional regulator IPR011789 Cu(I)-responsive transcriptional regulator 1 126 9.2E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.