Pseudomonas aeruginosa PAO1, PA4959 (fimX)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pae02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 147 | 249 | 1.1E-6 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 132 | 252 | 2.1E-16 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 69 | 682 | 1.3E-79 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 268 | 422 | 8.4E-19 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 256 | 431 | 1.4E-36 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 273 | 430 | 4.87E-24 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 441 | 691 | 7.7E-65 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 140 | 251 | 8.7E-9 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 6 | 131 | 2.2E-8 |
| CDD | cd00156 | REC | - | - | 11 | 105 | 1.19184E-5 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 446 | 677 | 2.8E-58 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 447 | 683 | 5.04604E-57 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 446 | 681 | 7.32E-53 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 439 | 683 | 1.6E-38 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 131 | 251 | 5.76E-16 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 270 | 425 | 4.75989E-27 |
| Coils | Coil | Coil | - | - | 132 | 152 | - |
| SUPERFAMILY | SSF52172 | CheY-like | IPR011006 | CheY-like superfamily | 6 | 142 | 3.7E-9 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 166 | 250 | 5.28774E-6 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 265 | 424 | 4.1E-14 |
| FunFam | G3DSA:3.30.70.270:FF:000086 | Protein FimX | - | - | 257 | 429 | 4.6E-82 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 256 | 428 | 3.1E-22 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.