Pseudomonas aeruginosa PAO1, PA5237

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005886 plasma membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01636
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016831 carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008694 3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01636
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006744 ubiquinone biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01636
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00130 Ubiquinone and other terpenoid-quinone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.20.5.570:FF:000001 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - 455 488 5.9E-18
Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IPR002830 UbiD decarboxylyase family 10 431 0.0
SUPERFAMILY SSF143968 UbiD C-terminal domain-like - - 323 487 2.35E-66
NCBIfam TIGR00148 JCVI: UbiD family decarboxylase IPR002830 UbiD decarboxylyase family 6 455 0.0
FunFam G3DSA:3.40.1670.10:FF:000001 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - 337 454 1.0E-71
Gene3D G3DSA:1.20.5.570 Single helix bin - - 455 488 1.1E-14
Gene3D G3DSA:3.40.1670.10 - - - 337 453 4.0E-43
Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. IPR023677 UbiD decarboxylyase, bacteria 1 487 72.0047
SUPERFAMILY SSF50475 FMN-binding split barrel - - 3 322 3.92E-126
PANTHER PTHR30108 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED IPR002830 UbiD decarboxylyase family 1 486 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.