Pseudomonas aeruginosa PAO1, PA5554 (atpD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 158358 Reviewed by curator
Molecular Function GO:0046961 proton-transporting ATPase activity, rotational mechanism
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 158358 Reviewed by curator
Cellular Component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046034 ATP metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50615
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00006
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015986 ATP synthesis coupled proton transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1902600 proton transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50615
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc PWY-7219 adenosine ribonucleotides de novo biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
KEGG pae00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Oxidative phosphorylation ECO:0000037
not_recorded
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01347 ATP synthase subunit beta [atpB]. IPR005722 ATP synthase, F1 complex, beta subunit 1 458 56.228584
Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 128 340 7.0E-63
CDD cd18110 ATP-synt_F1_beta_C - - 347 454 9.87302E-78
SUPERFAMILY SSF50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily 2 72 1.39E-23
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 75 346 6.71E-92
CDD cd18115 ATP-synt_F1_beta_N - - 2 74 2.78635E-31
SUPERFAMILY SSF47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase - - 343 457 1.28E-53
PANTHER PTHR15184 ATP SYNTHASE - - 3 458 0.0
Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain 6 71 5.2E-20
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 74 343 8.2E-115
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 140 325 1.2E-4
Gene3D G3DSA:2.40.10.170 - - - 1 73 4.3E-28
FunFam G3DSA:3.40.50.300:FF:000004 ATP synthase subunit beta - - 74 342 0.0
NCBIfam TIGR01039 JCVI: F0F1 ATP synthase subunit beta IPR005722 ATP synthase, F1 complex, beta subunit 3 458 0.0
CDD cd01133 F1-ATPase_beta_CD - - 75 345 0.0
Gene3D G3DSA:1.10.1140.10 - IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal 344 458 8.1E-61
FunFam G3DSA:1.10.1140.10:FF:000001 ATP synthase subunit beta - - 343 458 3.8E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.