Pseudomonas aeruginosa UCBPP-PA14, PA14_50040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 173 255 6.5E-22
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 181 256 1.9E-21
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 154 258 2.3E-37
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 14 85 1.1E-5
CDD cd06124 cupin_NimR-like_N - - 19 112 4.53231E-27
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 5 256 4.9E-80
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 16 182 3.11E-12
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 210 255 1.51E-7
Gene3D G3DSA:1.10.10.60 - - - 157 258 4.0E-20
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 19 143 1.4E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.