Pseudomonas aeruginosa UCBPP-PA14, PA14_60990 (radA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01498
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003684 damaged DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01498
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01498
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 66 286 2.01E-50
PRINTS PR01874 DNA repair protein radA signature - - 171 195 2.8E-94
PRINTS PR01874 DNA repair protein radA signature - - 245 271 2.8E-94
PRINTS PR01874 DNA repair protein radA signature - - 121 138 2.8E-94
FunFam G3DSA:3.30.230.10:FF:000011 DNA repair protein RadA - - 296 453 5.9E-91
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 88 241 2.5E-10
Pfam PF18073 Rubredoxin metal binding domain IPR041166 LapB, rubredoxin metal binding domain 8 35 1.4E-10
PRINTS PR01874 DNA repair protein radA signature - - 10 34 2.8E-94
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 252 452 2.73E-40
PRINTS PR01874 DNA repair protein radA signature - - 210 238 2.8E-94
PANTHER PTHR32472 DNA REPAIR PROTEIN RADA - - 3 452 7.0E-114
Pfam PF13541 Subunit ChlI of Mg-chelatase - - 361 427 8.3E-7
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 281 453 3.9E-21
CDD cd01121 RadA_SMS_N - - 8 274 0.0
PRINTS PR01874 DNA repair protein radA signature - - 319 342 2.8E-94
PRINTS PR01874 DNA repair protein radA signature - - 80 108 2.8E-94
FunFam G3DSA:3.40.50.300:FF:000050 DNA repair protein RadA - - 60 272 7.4E-99
Pfam PF13481 AAA domain - - 74 219 1.6E-13
NCBIfam TIGR00416 JCVI: DNA repair protein RadA IPR004504 DNA repair protein RadA 1 448 0.0
Hamap MF_01498 DNA repair protein RadA [radA]. IPR004504 DNA repair protein RadA 21 452 43.918098
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 57 271 4.5E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.